Package: MetabolSSMF
Type: Package
Title: Simplex-Structured Matrix Factorisation for Metabolomics
        Analysis
Version: 0.1.0
Authors@R: c(person(given = "Wenxuan",
                        family = "Liu",
                        role = c("aut", "cre"),
                        email = "wenxuan.liu@ucdconnect.ie"),
                 person(given = c("Thomas", "Brendan"),
                        family = "Murphy",
                        role = "aut"),
                 person(given = "Lorraine",
                        family = "Brennan",
                        role = "aut"))
Maintainer: Wenxuan Liu <wenxuan.liu@ucdconnect.ie>
Description: Provides a framework to perform soft clustering using
        simplex-structured matrix factorisation (SSMF). The package
        contains a set of functions for determining the optimal number
        of prototypes, the optimal algorithmic parameters, the
        estimation confidence intervals and the diversity of clusters.
        Abdolali, Maryam & Gillis, Nicolas (2020)
        <doi:10.1137/20M1354982>.
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Imports: LaplacesDemon, NMF, doParallel, foreach, iterators, lsei,
        mclust, tidyr
Suggests: knitr, rmarkdown, caroline, ggsci, BiocManager, Biobase
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
NeedsCompilation: no
Packaged: 2026-07-03 08:05:13 UTC; root
Author: Wenxuan Liu [aut, cre], Thomas Brendan Murphy [aut], Lorraine
        Brennan [aut]
Config/pak/sysreqs: libicu-dev
Repository: https://wenxuanliu1996.r-universe.dev
Date/Publication: 2025-03-04 12:34:16 UTC
RemoteUrl: https://github.com/wenxuanliu1996/metabolssmf
RemoteRef: HEAD
RemoteSha: 847c65f3373742a31964772898210f0341d93d4f